PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BS_B6E41024D.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 86aa    MW: 10271.9 Da    PI: 10.0308
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BS_B6E41024D.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR126.81.7e-08377290
                   FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                            Yn Y+ e+ F +r  k + +  +++  +++ vC ++g ++++++          + r+ C a++ + ++kd+ w++t     HnH+l+
  Traes_7BS_B6E41024D.2  3 IYNLYSWEIRFGIRYGKRRLNV-ERTKCMQEIVCDCSGVPKRSNT---------RSCRCRCPAMIWLLRSKDNSWYMT----SHNHSLT 77
                           59**************998884.44467899*******9988655.........599******************997....5999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-4377IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MIIYNLYSWE IRFGIRYGKR RLNVERTKCM QEIVCDCSGV PKRSNTRSCR CRCPAMIWLL  60
RSKDNSWYMT SHNHSLTDKS GQKLYS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753620.16e-29PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBLW5HVS14e-59W5HVS1_WHEAT; Uncharacterized protein
STRINGBRADI1G32950.11e-28(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]